Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015880289.1_cds_XP_016437447.1_33206
CDS Infomation

[gene=LOC107763476] [db_xref=GeneID:107763476] [protein=zinc finger CCCH domain-containing protein 53-like isoform X2] [protein_id=XP_016437447.1] [location=complement(join(52598..52677,52982..53085,53239..53398,53712..53963,54093..54184,54277..54462,54549..54734,54810..55846))] [gbkey=CDS]
Sequence

ATGGATGCATATGAAGCTACAAAAATAGTTTACCAAAGGATTCAAAATTTGGATCCTGAA
AATGCCTCAAAAGTTATGGGGATTCTTCTGATACAAGACCATGGTGAGAAAGAAATGATC
AGGTTAGCTTTTGGTCCAGAGGCTTTAGTTCACTCAGTGATTCTTAAAGCAAGAAAAGAA
CTTGGCCTAGCCTCAAACTCACCTTCTTCTACACCTTCAACTCCTTCTTCACCTTCACCT
TTTAGTGGTGTTTTTTCAAGGCAGAATTCTTCTTCTGGTGGAAGGATTCTTGGTGGTATA
AACCTTCCTTCACCTCTTAGCATAACTAGTAACAACCAATCTTCAACTGTTTCAGCTTCT
TGGAGTAATACTACTCCTAGCTTCTCTGACTTCCAAGAAACTGATCTAGTTAGTCCTAGT
GCTTCCACCAATGGAATCAGCAACTCCACTATGAATTCCTCTGCTCCACCCTTTTATTGC
AGTGGAGAAATGGATTTGATAGATGAGTTTCAACTACAGGACCAGCTTTCTTTCTTGAAT
GATGGGTCACCAACCTTGGGTCCTAAAAATCCTGACGTTTATTACCCACAGCAGCAGCAG
CAAGATTTAGCCTCCAGTCCAAGTGGGGATTTCTCTTCATTCAATTGGGGTAGCAACTCA
GTCAACGGCCTCTCCCATAGAAGGAGTTGCTCTGTGAGTGATATTTCTTTAGGTGGTGAT
GACCCAAATGGGGGATTTGGTTGGAAACCTTGTCTGTATTTTGCTAGAGGGTATTGTAAG
AATGGAAGTAGCTGTAGGTTCCTACATGGTGCTGGAGAGGTGGTATCTGAAGTTGTGGGG
TCACCTAGCAAGTTTGAGATGATGGAGCAGCATTGTCAACAACTTCTCAGATCTAAGTCA
ACATCTCAGCAGCAAAGACTAACTACTGCTTCTCAGCTCATGGCTTCTTCTAACTTCCCT
TTCTCTCCTGTGGCTGCTAACAAATGCATGAACTTTCTTCAGCAGCAACAGTTGCAGCAG
TCTGCTGAGAGTCCCAGAGCAGCTGCTGCTGCTGCATTGATGATGGGTGATGACATGCAT
AAGTTGAACAGAATTCGTTTTGAAAGAGGGGATTTTGGGTTGAATGGTGGAGCTGGGATA
GCAAATCCAGGTTCTAGGCAAATTTACTTGACTTTTCCTGCTGATAGTACTTTCAAAGAA
GAGGATGTTTCCAATTATTTCAGCACTTATGGGCCTGTTCAAGATGTGAGGATCCCATAC
CAGCAAAAGCGGATGTTTGGTTTTGTTACATTTGTTTATCCAGACACTGTGAAGACCATT
CTTGCCAAAGGAAATCCTCATTTTGTATGTGATGCTAGGGTGCTTGTCAAGCCATACAAA
GAGAAGGGCAAAGTCCCAGAAAAGTTTAGGAAGCAACAGCAGCAGATGGAGAGAGGAGAA
TTCACTGGATGTGGTAGTCCTACTGGCCTAGACTCCAGAGATCCTTTTGATATTCAGCTT
GGTGCAAGGATGTTTTACAATAGTCAAGACATGATGTTGAGGAGAAAATTGGAAGAACAA
GCTGATCTGCAACAAGCAATTGAGCTCCAAAGCAGGAGGCTGATGAATTTACAGCTTCTT
GATGTCAAGAGGAGCAACCATCACCGTGCCCTTTCATTGGGAGCTGTTATCCCGTCCCCA
CCTCACTCTCCAGGCTTCTTCAATCAAAATTTTGTTCATTCCCCCAACCTTAGCAGCCGA
GAAGCCATAGAAGAGAATGGTTTTGCTCCAAAAATGGCCAATTTTGCTGCTTTTTCCCCA
GAAGAAAAGAACCCAAATCTTACTGCAAAGGAGAGGGACTGCTACACATCTAAAGATGAA
AATAGCAATGGCAAAGAAAGTTCCAAGAAGGAAGAAAATGATTTTCAAGAAAGTTTGGAG
CATAATCTGCCAGATAGTCCATTTGCATCACCAAAAGCTGTTGGAGAATTCATCACAACT
TTCTCAAATGATGCTACTGTTGGAGAAGGTGACAAAGGTTCCCTTCAGGACATGGCACCA
TTGGAATGTAGGCCTGGACAGCTTGTTATGTTGCGTAGTTTAGCTTCCTTAGTTTAG

Peptide Sequence

PEP ID

XP_016437447.1
PEP Infomation

PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Nicotiana tabacum]
Sequence

MDAYEATKIVYQRIQNLDPENASKVMGILLIQDHGEKEMIRLAFGPEALVHSVILKARKE
LGLASNSPSSTPSTPSSPSPFSGVFSRQNSSSGGRILGGINLPSPLSITSNNQSSTVSAS
WSNTTPSFSDFQETDLVSPSASTNGISNSTMNSSAPPFYCSGEMDLIDEFQLQDQLSFLN
DGSPTLGPKNPDVYYPQQQQQDLASSPSGDFSSFNWGSNSVNGLSHRRSCSVSDISLGGD
DPNGGFGWKPCLYFARGYCKNGSSCRFLHGAGEVVSEVVGSPSKFEMMEQHCQQLLRSKS
TSQQQRLTTASQLMASSNFPFSPVAANKCMNFLQQQQLQQSAESPRAAAAAALMMGDDMH
KLNRIRFERGDFGLNGGAGIANPGSRQIYLTFPADSTFKEEDVSNYFSTYGPVQDVRIPY
QQKRMFGFVTFVYPDTVKTILAKGNPHFVCDARVLVKPYKEKGKVPEKFRKQQQQMERGE
FTGCGSPTGLDSRDPFDIQLGARMFYNSQDMMLRRKLEEQADLQQAIELQSRRLMNLQLL
DVKRSNHHRALSLGAVIPSPPHSPGFFNQNFVHSPNLSSREAIEENGFAPKMANFAAFSP
EEKNPNLTAKERDCYTSKDENSNGKESSKKEENDFQESLEHNLPDSPFASPKAVGEFITT
FSNDATVGEGDKGSLQDMAPLECRPGQLVMLRSLASLV

Transcript Sequence

Gene sequence data has not been registered.